ADAM: Data Alignment/Map
ADAM provides both an application programming interface (API) and a command line interface (CLI) for manipulating genomic data on a computing cluster. ADAM operates on data stored inside of Parquet with the bdg-formats schemas, using Apache Spark, and provides scalable performance on clusters larger than 100 machines.
The latest available release of ADAM is 0.6.1. ADAM is available for projects using Maven or SBT through the Sonatype OSS repository.
ADAM has been described in a UC Berkeley EECS technical report. The Bibtex for this reference is:
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ADAM is available under the Apache 2 open source software (OSS) license. This OSS license is non-viral, and places no restrictions on users who would like to use or modify the software.