org.bdgenomics.adam.rdd.feature

NarrowPeakOutFormatter

case class NarrowPeakOutFormatter() extends OutFormatter[Feature] with Product with Serializable

OutFormatter that reads streaming NarrowPeak format.

Linear Supertypes
Product, Equals, OutFormatter[Feature], Serializable, Serializable, AnyRef, Any
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Inherited
  1. NarrowPeakOutFormatter
  2. Product
  3. Equals
  4. OutFormatter
  5. Serializable
  6. Serializable
  7. AnyRef
  8. Any
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Instance Constructors

  1. new NarrowPeakOutFormatter()

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any
  3. final def ##(): Int

    Definition Classes
    AnyRef → Any
  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any
  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any
  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  8. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  9. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  10. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any
  11. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any
  12. val narrowPeakParser: NarrowPeakParser

  13. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  14. final def notify(): Unit

    Definition Classes
    AnyRef
  15. final def notifyAll(): Unit

    Definition Classes
    AnyRef
  16. def read(is: InputStream): Iterator[Feature]

    Reads features from an input stream in NarrowPeak format.

    Reads features from an input stream in NarrowPeak format.

    is

    An InputStream connected to the process we are piping from.

    returns

    Returns an iterator of Features read from the stream.

    Definition Classes
    NarrowPeakOutFormatterOutFormatter
  17. val stringency: ValidationStringency

  18. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef
  19. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  20. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  21. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Product

Inherited from Equals

Inherited from OutFormatter[Feature]

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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