org.bdgenomics.adam.rdd

InnerTreeRegionJoinAndGroupByRight

case class InnerTreeRegionJoinAndGroupByRight[T, U]()(implicit evidence$5: ClassTag[T], evidence$6: ClassTag[U]) extends RegionJoin[T, U, Iterable[T], U] with TreeRegionJoin[T, U] with Product with Serializable

Performs an inner region join, followed logically by grouping by the right value. This is implemented without any shuffling; the join naturally returns values on the left grouped by the right value.

Linear Supertypes
Product, Equals, TreeRegionJoin[T, U], RegionJoin[T, U, Iterable[T], U], Serializable, Serializable, AnyRef, Any
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Inherited
  1. InnerTreeRegionJoinAndGroupByRight
  2. Product
  3. Equals
  4. TreeRegionJoin
  5. RegionJoin
  6. Serializable
  7. Serializable
  8. AnyRef
  9. Any
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Instance Constructors

  1. new InnerTreeRegionJoinAndGroupByRight()(implicit arg0: ClassTag[T], arg1: ClassTag[U])

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any
  3. final def ##(): Int

    Definition Classes
    AnyRef → Any
  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any
  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any
  7. def broadcastAndJoin(tree: IntervalArray[ReferenceRegion, T], joinedRDD: RDD[(ReferenceRegion, U)]): RDD[(Iterable[T], U)]

  8. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  9. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  10. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  11. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any
  12. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any
  13. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  14. final def notify(): Unit

    Definition Classes
    AnyRef
  15. final def notifyAll(): Unit

    Definition Classes
    AnyRef
  16. def partitionAndJoin(baseRDD: RDD[(ReferenceRegion, T)], joinedRDD: RDD[(ReferenceRegion, U)]): RDD[(Iterable[T], U)]

    Performs an inner join between two RDDs, followed by a groupBy on the right object.

    Performs an inner join between two RDDs, followed by a groupBy on the right object.

    baseRDD

    The 'left' side of the join

    joinedRDD

    The 'right' side of the join

    returns

    An RDD of pairs (Iterable[x], y), where the Iterable[x] is from baseRDD, y is from joinedRDD, and all values in the Iterable[x] are aligned at regions that overlap the region corresponding to y. If the iterable is empty, the key-value pair is filtered out.

    Definition Classes
    InnerTreeRegionJoinAndGroupByRightRegionJoin
  17. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef
  18. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  19. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  20. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Product

Inherited from Equals

Inherited from TreeRegionJoin[T, U]

Inherited from RegionJoin[T, U, Iterable[T], U]

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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